Computational aspects of cellular intelligence and their role in artificial intelligence.

The work presented in this thesis is concerned with an exploration of the computational aspects of the primitive intelligence associated with single-celled organisms. The main aim is to explore this Cellular Intelligence and its role within Artificial Intelligence. The findings of an extensive literature search into the biological characteristics, properties and mechanisms associated with Cellular Intelligence, its underlying machinery - Cell Signalling Networks and the existing computational methods used to capture it are reported. The results of this search are then used to fashion the development of a versatile new connectionist representation, termed the Artificial Reaction Network (ARN). The ARN belongs to the branch of Artificial Life known as Artificial Chemistry and has properties in common with both Artificial Intelligence and Systems Biology techniques, including: Artificial Neural Networks, Artificial Biochemical Networks, Gene Regulatory Networks, Random Boolean Networks, Petri Nets, and S-Systems. The thesis outlines the following original work: The ARN is used to model the chemotaxis pathway of Escherichia coli and is shown to capture emergent characteristics associated with this organism and Cellular Intelligence more generally. The computational properties of the ARN and its applications in robotic control are explored by combining functional motifs found in biochemical network to create temporal changing waveforms which control the gaits of limbed robots. This system is then extended into a complete control system by combining pattern recognition with limb control in a single ARN. The results show that the ARN can offer increased flexibility over existing methods. Multiple distributed cell-like ARN based agents termed Cytobots are created. These are first used to simulate aggregating cells based on the slime mould Dictyostelium discoideum. The Cytobots are shown to capture emergent behaviour arising from multiple stigmergic interactions. Applications of Cytobots within swarm robotics are investigated by applying them to benchmark search problems and to the task of cleaning up a simulated oil spill. The results are compared to those of established optimization algorithms using similar cell inspired strategies, and to other robotic agent strategies. Consideration is given to the advantages and disadvantages of the technique and suggestions are made for future work in the area. The report concludes that the Artificial Reaction Network is a versatile and powerful technique which has application in both simulation of chemical systems, and in robotic control, where it can offer a higher degree of flexibility and computational efficiency than benchmark alternatives. Furthermore, it provides a tool which may possibly throw further light on the origins and limitations of the primitive intelligence associated with cells

Artificial reaction networks.

In this paper we present a novel method of simulating cellular intelligence, the Artificial Reaction Network (ARN). The ARN can be described as a modular S-System, with some properties in common with other Systems Biology and AI techniques, including Random Boolean Networks, Petri Nets, Artificial Biochemical Networks and Artificial Neural Networks. We validate the ARN against standard biological data, and successfully apply it to simulate cellular intelligence associated with the well-characterized cell signaling network of Escherichia coli chemotaxis. Finally, we explore the adaptability of the ARN, as a means to develop novel AI techniques, by successfully applying the simulated E. coli chemotaxis to a general optimization problem

An alternative design for electrostatically accelerated ion beam fusion.

Inertial Electrostatic Confinement (IEC) is an alternative approach to nuclear fusion which uses electrostatically accelerated ions instead of hot plasmas. The best known device that utilises the principle is the Farnsworth-Hirsch Fusor. It has been argued that such devices have potential applications in spaceflight because of weight and other advantages. However, like other fusion reactors, practical machines have not yet been forthcoming. This paper builds on previous work to suggest an alternative topology for IEC-like reactors. This topology inverts the normal machine structure, potentially has significant advantages over standard designs and may achieve the reaction-rates necessary for practical power generation

Combining biochemical network motifs within an ARN-agent control system.

The Artificial Reaction Network (ARN) is an Artificial Chemistry representation inspired by cell signaling networks. The ARN has previously been applied to the simulation of the chemotaxis pathway of Escherichia coli and to the control of limbed robots. In this paper we discuss the design of an ARN control system composed of a combination of network motifs found in actual biochemical networks. Using this control system we create multiple cell-like autonomous agents capable of coordinating all aspects of their behavior, recognizing environmental patterns and communicating with other agent's stigmergically. The agents are applied to simulate two phases of the life cycle of Dictyostelium discoideum: vegetative and aggregation phase including the transition. The results of the simulation show that the ARN is well suited for construction of biochemical regulatory networks. Furthermore, it is a powerful tool for modeling multi agent systems such as a population of amoebae or bacterial colony

Artificial chemistry approach to exploring search spaces using artificial reaction network agents.

The Artificial Reaction Network (ARN) is a cell signaling network inspired representation belonging to the branch of A-Life known as Artificial Chemistry. It has properties in common with both AI and Systems Biology techniques including Artificial Neural Networks, Petri Nets, Random Boolean Networks and S-Systems. The ARN has been previously applied to control of limbed robots and simulation of biological signaling pathways. In this paper, multiple instances of independent distributed ARN controlled agents function to find the global minima within a set of simulated environments characterized by benchmark problems. The search behavior results from the internal ARN network, but is enhanced by collective activities and stigmergic interaction of the agents. The results show that the agents are able to find best fitness solutions in all problems, and compare well with results of cell inspired optimization algorithms. Such a system may have practical application in distributed or swarm robotics

Exploring aspects of cell intelligence with artificial reaction networks.

The Artificial Reaction Network (ARN) is a Cell Signalling Network inspired connectionist representation belonging to the branch of A-Life known as Artificial Chemistry. Its purpose is to represent chemical circuitry and to explore computational properties responsible for generating emergent high-level behaviour associated with cells. In this paper, the computational mechanisms involved in pattern recognition and spatio-temporal pattern generation are examined in robotic control tasks. The results show that the ARN has application in limbed robotic control and computational functionality in common with Artificial Neural Networks. Like spiking neural models, the ARN can combine pattern recognition and complex temporal control functionality in a single network, however it offers increased flexibility. Furthermore, the results illustrate parallels between emergent neural and cell intelligence

Applications and design of cooperative multi-agent ARN-based systems.

The Artificial Reaction Network (ARN) is an Artificial Chemistry inspired by Cell Signalling Networks (CSNs). Its purpose is to represent chemical circuitry and to explore the computational properties responsible for generating emergent high-level behaviour. In previous work, the ARN was applied to the simulation of the chemotaxis pathway of E. coli and to the control of quadrupedal robotic gaits. In this paper, the design and application of ARN-based cell-like agents termed Cytobots are explored. Such agents provide a facility to explore the dynamics and emergent properties of multicellular systems. The Cytobot ARN is constructed by combining functional motifs found in real biochemical networks. By instantiating this ARN, multiple Cytobots are created, each of which is capable of recognizing environmental patterns, stigmergic communication with others and controlling its own trajectory. Applications in biological simulation and robotics are investigated by first applying the agents to model the life-cycle phases of the cellular slime mould D. discoideum and then to simulate an oil-spill clean-up operation. The results demonstrate that an ARN based approach provides a powerful tool for modelling multi-agent biological systems and also has application in swarm robotics

Making America A Better Place for All: Sustainable Development Recommendations for the Biden Administration

In 2015, the United Nations Member States, including the United States, unanimously approved 17 Sustainable Development Goals (SDGs) to be achieved by 2030. The SDGs are nonbinding; each nation is to implement them based on its own priorities and circumstances. This Article argues that the SDGs are a critical normative framework the United States should use to improve human quality of life, freedom, and opportunity by integrating economic and social development with environmental protection. It collects the recommendations of 22 experts on steps that the Biden-Harris Administration should take now to advance each of the SDGs. It is part of a book project that will recommend not only federal actions, but also actions by state and local governments, the private sector, and civil society. In the face of multiple challenges and opportunities, this Article is intended to contribute to a robust public discussion about how to accelerate the transition to a sustainable society and make America a better place for all

Making America a Better Place for All: Sustainable Development Recommendations for the Biden Administration

In 2015, the United Nations Member States, including the United States, unanimously approved 17 Sustainable Development Goals (SDGs) to be achieved by 2030. The SDGs are nonbinding; each nation is to implement them based on its own priorities and circumstances. This Article argues that the SDGs are a critical normative framework the United States should use to improve human quality of life, freedom, and opportunity by integrating economic and social development with environmental protection. It collects the recommendations of 22 experts on steps that the Biden-Harris Administration should take now to advance each of the SDGs. It is part of a book project that will recommend not only federal actions, but also actions by state and local governments, the private sector, and civil society. In the face of multiple challenges and opportunities, this Article is intended to contribute to a robust public discussion about how to accelerate the transition to a sustainable society and make America a better place for all

Increasing frailty is associated with higher prevalence and reduced recognition of delirium in older hospitalised inpatients: results of a multi-centre study

Purpose: Delirium is a neuropsychiatric disorder delineated by an acute change in cognition, attention, and consciousness. It is common, particularly in older adults, but poorly recognised. Frailty is the accumulation of deficits conferring an increased risk of adverse outcomes. We set out to determine how severity of frailty, as measured using the CFS, affected delirium rates, and recognition in hospitalised older people in the United Kingdom. Methods: Adults over 65 years were included in an observational multi-centre audit across UK hospitals, two prospective rounds, and one retrospective note review. Clinical Frailty Scale (CFS), delirium status, and 30-day outcomes were recorded. Results: The overall prevalence of delirium was 16.3% (483). Patients with delirium were more frail than patients without delirium (median CFS 6 vs 4). The risk of delirium was greater with increasing frailty [OR 2.9 (1.8–4.6) in CFS 4 vs 1–3; OR 12.4 (6.2–24.5) in CFS 8 vs 1–3]. Higher CFS was associated with reduced recognition of delirium (OR of 0.7 (0.3–1.9) in CFS 4 compared to 0.2 (0.1–0.7) in CFS 8). These risks were both independent of age and dementia. Conclusion: We have demonstrated an incremental increase in risk of delirium with increasing frailty. This has important clinical implications, suggesting that frailty may provide a more nuanced measure of vulnerability to delirium and poor outcomes. However, the most frail patients are least likely to have their delirium diagnosed and there is a significant lack of research into the underlying pathophysiology of both of these common geriatric syndromes